Better yet, here is the entire removal section from my manual. You did all this?
Manual Transmission Assembly
MANUAL TRANSMISSION AND DIFFERENTIAL
6. Manual Transmission Assembly
A: REMOVAL
1) Disconnect the ground cable from battery.
2) Remove the intercooler. <Ref. to IN(STI)-13,
REMOVAL, Intercooler.>
3) Disconnect the following harness connectors,
and then remove the engine hanger rear.
4) Remove the secondary air combination valve.
<Ref. to EC(STI)-54, SECONDARY AIR COMBINATION
VALVE LH, REMOVAL, Secondary Air
Combination Valve.>
5) Disconnect the transmission radio ground cord
terminal.
6) Remove the starter assembly. <Ref. to SC(STI)-
7, REMOVAL, Starter.>
7) Remove the operating cylinder from the transmission.
NOTE:
Hang the removed operating cylinder with a piece
of wire.
8) Remove the return spring from the release fork.
9) Remove the pitching stopper. <Ref. to
6MT(TY85)-29, PITCHING STOPPER, REMOVAL,
Transmission Mounting System.>
10) Remove the pitching stopper bracket, return
spring bracket, and transmission radio ground cable.
11) Set the ST.
ST1 41099AA011 ENGINE SUPPORT BRACKET
ST2 41099AA020 ENGINE SUPPORT
(A) Rear oxygen sensor connector
(B) Neutral position switch backup light switch connector
MT-03088
(B)
(A)
MT-03086
CL-00445
MT-02302
MT-03091
ST2
ST1
6MT(TY85)-32
Manual Transmission Assembly
MANUAL TRANSMISSION AND DIFFERENTIAL
12) Remove the clutch release shaft.
(1) Remove the plug using a hexagon wrench.
(2) Attach a 6 mm (0.24 in) bolt to the release
shaft, and pull out the release shaft.
(3) Lift the release fork, and remove from the
claw of the release bearing. Pull the release
fork to the engine side, and make it so that it
moves freely.
13) Remove the center exhaust pipe. <Ref. to
EX(STI)-7, REMOVAL, Center Exhaust Pipe.>
14) Remove the bolts which hold upper side of
transmission to engine.
15) Remove the front wheels.
16) Lift up the vehicle, and remove the transmission
under cover.
17) Drain transmission gear oil completely. <Ref. to
6MT(TY85)-26, REPLACEMENT, Transmission
Gear Oil.>
18) Remove the heat shield cover.
19) Remove the propeller shaft. <Ref. to DS-12,
REMOVAL, Propeller Shaft.>
20) Remove the front stabilizer link.
21) Remove the ball joint of front arm from the
housing.
22) Remove the front drive shaft. <Ref. to DS-48,
REMOVAL, Front Drive Shaft.>
23) Place the transmission jack under the transmission.
CAUTION:
Always support the transmission case with a
transmission jack.
24) Remove the front crossmember and rear crossmember
from the vehicle.
25) Move the transmission to the right side of the
vehicle, and remove the joint COMPL, stay bolts
and reverse check cable.
NOTE:
If the transmission is not moved aside, the joint
COMPL and stay bolts may contact the body and
cause damage.
MT-01524
FS-00117
FS-00106
(A) Joint COMPL bolt
(B) Stay bolt
(C) Reverse check cable
MT-03193
MT-03194
MT-00886
(C)
(A)
(B)
6MT(TY85)-33
Manual Transmission Assembly
MANUAL TRANSMISSION AND DIFFERENTIAL
26) Tighten the turnbuckle of the ST to tilt the engine
assembly towards the back.
27) Remove the bolts and nuts holding the bottom
of transmission to the engine, and remove the
transmission from the vehicle.
NOTE:
• During removal, be careful not to hit the transmission
against the body when pulling towards the
rear.
• The clutch pipe and breather pipe may interfere
with each other. Remove carefully.
28) Remove the transmission cushion rubber from
the transmission assembly.