So the cel came back this morning. Still didn't feel any different. Was waiting to get on the highway then it came on as I started up the ramp. The highway boost or fuel cut has stopped happening.
The codes are
Misfire Cyl 1
Misfire Cyl 2
EGR(i KNOW WE DONT HAVE ONE BUT ITS WHAT THE CODE READER SAID) Temp Sensor High
Still no feeling of a misfire at any point other than right after starting it in the morning (A well known E85 issue i thought), and when the turbo timer ends and it turns off it seems it shakes a little more than i'd like(Not sure thats a misfire though).